bitter-house-36637
02/08/2023, 7:17 AMTraceback (most recent call last):
File "/usr/local/lib/python3.10/site-packages/flytekit/exceptions/scopes.py", line 165, in system_entry_point
return wrapped(*args, **kwargs)
File "/usr/local/lib/python3.10/site-packages/flytekit/core/base_task.py", line 499, in dispatch_execute
raise e
File "/usr/local/lib/python3.10/site-packages/flytekit/core/base_task.py", line 496, in dispatch_execute
native_outputs = self.execute(**native_inputs)
File "/usr/local/lib/python3.10/site-packages/flytekit/extras/tasks/shell.py", line 215, in execute
subprocess.check_call(gen_script, shell=True)
File "/usr/local/lib/python3.10/subprocess.py", line 369, in check_call
raise CalledProcessError(retcode, cmd)
Message:
Command '
mkdir -p output
query=data/kitasatospora/k_sp_CB01950_penicillin.fasta
db=data/kitasatospora/kitasatospora_proteins.faa
blastout=output/AMK19_00175_blastx_kitasatospora.tab
blastx -out $blastout -outfmt 6 -query $query -db $db >> stdout.txt 2>&1
' returned non-zero exit status 127.
SYSTEM ERROR! Contact platform administrators.
Any idea how to fix this?freezing-airport-6809
tall-lock-23197
tall-lock-23197
bitter-house-36637
02/08/2023, 3:21 PMpyflyte --pkgs blast package --image <http://ghcr.io/flyteorg/flytecookbook:blast-latest|ghcr.io/flyteorg/flytecookbook:blast-latest>
flytectl register files --project flytesnacks --domain development --archive flyte-package.tgz --version v1
I ran into this error:
INFO[0000] [0] Couldn't find a config file []. Relying on env vars and pflags.
panic: runtime error: invalid memory address or nil pointer dereference
[signal SIGSEGV: segmentation violation code=0x1 addr=0x0 pc=0x1f5dadb]
goroutine 1 [running]:
<http://github.com/flyteorg/flytectl/cmd/core.CommandContext.AdminClient(...)|github.com/flyteorg/flytectl/cmd/core.CommandContext.AdminClient(...)>
/home/runner/work/flytectl/flytectl/cmd/core/cmd_ctx.go:57
<http://github.com/flyteorg/flytectl/cmd/register.register({0x30e6f78|github.com/flyteorg/flytectl/cmd/register.register({0x30e6f78>, 0xc000120000}, {0x30d98a0?, 0xc000953260?}, {0x0, {0x0, 0x0}, {0x0, 0x0}, {0x0, ...}, ...}, ...)
/home/runner/work/flytectl/flytectl/cmd/register/register_util.go:188 +0x37b
<http://github.com/flyteorg/flytectl/cmd/register.registerFile({0x30e6f78|github.com/flyteorg/flytectl/cmd/register.registerFile({0x30e6f78>, 0xc000120000}, {0xc000cef2c0, _}, {_, _, _}, {0x0, {0x0, 0x0}, ...}, ...)
/home/runner/work/flytectl/flytectl/cmd/register/register_util.go:606 +0x95b
<http://github.com/flyteorg/flytectl/cmd/register.Register({0x30e6f78|github.com/flyteorg/flytectl/cmd/register.Register({0x30e6f78>, 0xc000120000}, {0xc00015f600?, 0x0?, 0x0?}, 0x41b9520, {0x0, {0x0, 0x0}, {0x0, ...}, ...})
/home/runner/work/flytectl/flytectl/cmd/register/files.go:160 +0x6ca
<http://github.com/flyteorg/flytectl/cmd/register.registerFromFilesFunc(|github.com/flyteorg/flytectl/cmd/register.registerFromFilesFunc(>{0x30e6f78, 0xc000120000}, {0xc00015f600, 0x1, 0x8}, {0x0, {0x0, 0x0}, {0x0, 0x0}, ...})
/home/runner/work/flytectl/flytectl/cmd/register/files.go:118 +0xcd
<http://github.com/flyteorg/flytectl/cmd/core.generateCommandFunc.func1(0xc0009b8a00|github.com/flyteorg/flytectl/cmd/core.generateCommandFunc.func1(0xc0009b8a00>?, {0xc00015f600, 0x1, 0x8})
/home/runner/work/flytectl/flytectl/cmd/core/cmd.go:70 +0x93d
<http://github.com/spf13/cobra.(*Command).execute(0xc0009b8a00|github.com/spf13/cobra.(*Command).execute(0xc0009b8a00>, {0xc00015f580, 0x8, 0x8})
/home/runner/go/pkg/mod/github.com/spf13/cobra@v1.4.0/command.go:856 +0x67c
<http://github.com/spf13/cobra.(*Command).ExecuteC(0xc000cb7400)|github.com/spf13/cobra.(*Command).ExecuteC(0xc000cb7400)>
/home/runner/go/pkg/mod/github.com/spf13/cobra@v1.4.0/command.go:974 +0x3b4
<http://github.com/spf13/cobra.(*Command).Execute(...)|github.com/spf13/cobra.(*Command).Execute(...)>
/home/runner/go/pkg/mod/github.com/spf13/cobra@v1.4.0/command.go:902
<http://github.com/flyteorg/flytectl/cmd.ExecuteCmd()|github.com/flyteorg/flytectl/cmd.ExecuteCmd()>
/home/runner/work/flytectl/flytectl/cmd/root.go:137 +0x1e
main.main()
/home/runner/work/flytectl/flytectl/main.go:12 +0x1d
what is the config file referred to? Thanksaverage-finland-92144
02/08/2023, 7:46 PMtall-lock-23197