ancient-wolf-19325
07/01/2024, 1:09 PMfoo.txt and bar.txt):
import os
from flytekit import task, workflow, Resources
from flytekit.types.file import FlyteFile
from flytekit.types.directory import FlyteDirectory
from typing import Tuple
@workflow
def wf(dirpath: str) -> str:
# These two below works, as get_dir downloads the directory content to the local disk.
flytedir = get_dir(dirpath=dirpath)
foo, bar = do_stuff_on_dir(flytedir=flytedir)
hello = say_hello(foo=foo, bar=bar)
return hello
@task()
def get_dir(dirpath: str) -> FlyteDirectory:
fd = FlyteDirectory(path=dirpath)
return fd
@task()
def do_stuff_on_dir(flytedir: FlyteDirectory) -> Tuple[str, str]:
texts = []
for fname in os.listdir(flytedir):
filepath = os.path.join(flytedir, fname)
with open(filepath, 'r') as f:
content = f.read()
texts.append(content)
# Do stuff
texts = [texts[1], texts[0]]
return texts
@task(requests=Resources(cpu="1", mem="1000Mi", ephemeral_storage="2000Mi"), limits=Resources(cpu="2", mem="1000Mi", ephemeral_storage="3000Mi"))
def say_hello(foo: str, bar: str) -> str:
return f"Hello, {foo} and {bar}!"
However when run on a cluster (deployment on a single cluster) this comes with a k8s overhead for spawning the temporary pods for each task. To speed up the workflow I was thinking about reducing the overhead by aggregating tasks, reading files from the bucket and doing stuff on them in a single task. Is there a preferred way to do it, effectively getting to the same local tmp directory structure before returning a FlyteDirectory as a task output?
For instance something like the following chunk works in sandbox but not on my single cluster deployment (exploiting FlyteDirectory.listdir(flytedir))
import os
from flytekit import task, workflow, Resources
from flytekit.types.file import FlyteFile
from flytekit.types.directory import FlyteDirectory
from typing import Tuple
@workflow
def wf(dirpath: str) -> str:
foo, bar = get_dir_and_do_stuff(dirpath=dirpath)
hello = say_hello(foo=foo, bar=bar)
return hello
@task()
def get_dir_and_do_stuff(dirpath: str) -> Tuple[str, str]:
flytedir = FlyteDirectory(path=dirpath)
texts = []
# for fname in os.listdir(flytedir): # This works only locally (not even sandbox)
for fname in flytedir.listdir(flytedir): # This works on sandbox but not on cluster
filepath = os.path.join(flytedir, fname)
infile = FlyteFile(path=filepath)ancient-wolf-19325
07/01/2024, 1:09 PM>>```with open(infile, 'r') as f: content = f.read() texts.append(content) # Do stuff # ... return texts @task() def say_hello(foo: str, bar: str) -> str: return f"Hello, {foo} and {bar}!"```
I'd like to avoid the alternative of having a single task which instead of exploiting FlyteDirectories just uses the GS client to read from a bucket.
Any other tip for optimizing workflows for speed?
Thanks!
*# Answer*
To optimize workflows for speed and reduce Kubernetes overhead, you can aggregate tasks and handle file operations within a single task. However, there are some nuances to consider when dealing with FlyteDirectory and FlyteFile types, especially in different environments (local, sandbox, cluster).
### Key Points:
1. **FlyteDirectory Handling**: Flyte handles FlyteDirectory by downloading the contents to a local path. However, the behavior can differ between local, sandbox, and cluster environments.
2. **FlyteFile and FlyteDirectory Methods**: Methods like `listdir` and `download` can help manage files within these types.
### Aggregating Tasks:
You can combine the operations of downloading a directory and processing its contents within a single task. This approach reduces the overhead of spawning multiple pods.
### Example:
Here's an optimized version of your workflow that aggregates the tasks:
import os
from flytekit import task, workflow, Resources
from flytekit.types.directory import FlyteDirectory
from typing import Tuple
@workflow
def wf(dirpath: str) -> str:
foo, bar = get_dir_and_do_stuff(dirpath=dirpath)
hello = say_hello(foo=foo, bar=bar)
return hello
@task()
def get_dir_and_do_stuff(dirpath: str) -> Tuple[str, str]:
flytedir = FlyteDirectory(path=dirpath)
# Ensure the directory is downloaded
flytedir.download()
texts = []
for fname in os.listdir(flytedir.path):
filepath = os.path.join(flytedir.path, fname)
with open(filepath, 'r') as f:
content = f.read()
texts.append(content)
# Do stuff
texts = [texts[1], texts[0]] # Example operation
return texts
@task(requests=Resources(cpu="1", mem="1000Mi", ephemeral_storage="2000Mi"), limits=Resources(cpu="2", mem="1000Mi", ephemeral_storage="3000Mi"))
def say_hello(foo: str, bar: str) -> str:
return f"Hello, {foo} and {bar}!"
```
### Explanation:
1. Single Task for Directory and Processing: The get_dir_and_do_stuff task handles both downloading the directory and processing its contents.
2. Downloading Directory: The download method ensures that the directory contents are available locally.
3. Processing Files: Using os.listdir and open to read file contents.
### Notes:
- FlyteDirectory.download(): This method ensures that the directory contents are downloaded to the local path. This is crucial for ensuring consistency across different environments.ancient-wolf-19325
07/01/2024, 1:09 PM>>- Local Path Handling: When usingReferences: - FlyteDirectory Documentation - Flyte Issues on GitHub Would you like more details on any specific part of this approach? Sources: - FlyteDirectory Documentation - Flyte Issues on GitHub Slack Link https://flyte-org.slack.com/archives/CP2HDHKE1/p1719839357.902199 👍 0 button 👎 0 button 💡 Hint: Mention @runllm in the thread for followups., make sure to use theos.listdirattribute of FlyteDirectory to access the local directory.path